DEG database

Organism Salmonella typhimurium LT2
RefSeq NC_003197
Essential Genes 230
Non-essential Genes 4228
Method Method
Medium Rich medium
Pubmed 15009898
Reference Knuth K, et al (2004). Large-scale identification of essential Salmonella genes by trapping lethal insertions. Mol Microbiol, 51:1729-44.
Distribution of essential genes on leading or lagging strand
Distribution of essential genes cellular location
Scatter of GO enrichment
Scatter of KEGG enrichment
Search by Sequence (BLAST)
organism in bacteria
No. DEG ID Gene Name Function Organism
1 DEG10110001 dnaK chaperone Hsp70 Salmonella typhimurium LT2
2 DEG10110002 ileS isoleucine tRNA synthetase Salmonella typhimurium LT2
3 DEG10110003 surA parvulin-like peptidyl-prolyl isomerase Salmonella typhimurium LT2
4 DEG10110004 imp Organic solvent tolerance protein precursor Salmonella typhimurium LT2
5 DEG10110005 ftsI peptidoglykan-synthetase Salmonella typhimurium LT2
6 DEG10110006 murE meso-diaminopimelate-adding enzyme Salmonella typhimurium LT2
7 DEG10110007 murD UDP-Nac-muramoylalanine-D-glutamate ligase Salmonella typhimurium LT2
8 DEG10110008 ftsW cell division membrane protein Salmonella typhimurium LT2
9 DEG10110009 murG UDP-N-acetyl-glucosamine-transferase Salmonella typhimurium LT2
10 DEG10110010 murC UDP-N-acetyl-muramate:alanine ligase Salmonella typhimurium LT2
11 DEG10110011 ddlB/ddl D-alanine-D-alanine ligase B Salmonella typhimurium LT2
12 DEG10110012 ftsA ATP-binding cell division protein Salmonella typhimurium LT2
13 DEG10110013 ftsZ cell division GTPase Salmonella typhimurium LT2
14 DEG10110014 lpdA dihydrolipoamide-dehydrogenase Salmonella typhimurium LT2
15 DEG10110015 gcd glucose dehydrogenase Salmonella typhimurium LT2
16 DEG10110016 tsf translation elongation factor EF-Ts Salmonella typhimurium LT2
17 DEG10110017 pyrH uridylate kinase Salmonella typhimurium LT2
18 DEG10110018 uppS undecaprenyl pyrophosphate synthetase Salmonella typhimurium LT2
19 DEG10110019 cdsA CDP-diglyceride synthetase Salmonella typhimurium LT2
20 DEG10110020 yaeT predicted outer membrane protein Salmonella typhimurium LT2
21 DEG10110021 lpxA Acyl-UDP-Nac-glucosamine-O-acyltransferase Salmonella typhimurium LT2
22 DEG10110022 accA acetylCoA carboxylase Salmonella typhimurium LT2
23 DEG10110023 yafD hypothetical Salmonella typhimurium LT2
24 DEG10110024 STM0268 hypothetical Salmonella typhimurium LT2
25 DEG10110025 rhsE rhs family protein Salmonella typhimurium LT2
26 DEG10110026 safC papC-like porin protein (fimbrial biogenesis) Salmonella typhimurium LT2
27 DEG10110027 STM0345 hypothetical Salmonella typhimurium LT2
28 DEG10110028 yaiY hypothetical Salmonella typhimurium LT2
29 DEG10110029 phoR signal transduction histidine kinase Salmonella typhimurium LT2
30 DEG10110030 secF preprotein translocase Salmonella typhimurium LT2
31 DEG10110031 dxs Deoxyxylulose-5-phosphate synthase Salmonella typhimurium LT2
32 DEG10110032 STM0438 TPR repeat protein Salmonella typhimurium LT2
33 DEG10110033 cyoD polyprenyl transferase Salmonella typhimurium LT2
34 DEG10110034 clpX ATP-dependent protease Salmonella typhimurium LT2
35 DEG10110035 acrB cation/multidrug efflux pump Salmonella typhimurium LT2
36 DEG10110036 adk adenylate-kinase Salmonella typhimurium LT2
37 DEG10110037 hemH ferrochelatase Salmonella typhimurium LT2
38 DEG10110038 lpxH UDP-2,3-diacylglucosamine hydrolase Salmonella typhimurium LT2
39 DEG10110039 folD 5,10-methylene-THF dehydrogenase Salmonella typhimurium LT2
40 DEG10110040 STM0557 hypothetical protein Salmonella typhimurium LT2
41 DEG10110041 cstA membrane proteincarbon starvation Salmonella typhimurium LT2
42 DEG10110042 ybdR threonine dehydrogenase Salmonella typhimurium LT2
43 DEG10110043 citE citrate lyase Salmonella typhimurium LT2
44 DEG10110044 holA DNA-polymerase III delta subunit Salmonella typhimurium LT2
45 DEG10110045 ybeX hypothetical protein, containing CBS domain Salmonella typhimurium LT2
46 DEG10110046 glnS glutamine tRNA synthetase Salmonella typhimurium LT2
47 DEG10110047 dcoC hypothetical Salmonella typhimurium LT2
48 DEG10110048 hutH histidine ammonia lyase Salmonella typhimurium LT2
49 DEG10110049 ybhP hypothetical Salmonella typhimurium LT2
50 DEG10110050 yliB ABC-type/oligopeptide/nickel transport system Salmonella typhimurium LT2
51 DEG10110051 STM0857 acylCoA-dehydrogenase Salmonella typhimurium LT2
52 DEG10110052 STM0858 flavoprotein ubiquinone oxidoreductase Salmonella typhimurium LT2
53 DEG10110053 ybjO hypothetical Salmonella typhimurium LT2
54 DEG10110054 ulaA hypothetical Salmonella typhimurium LT2
55 DEG10110055 STM0932 hypothetical Salmonella typhimurium LT2
56 DEG10110056 ycaL Zn-dependent protease, chaperone Salmonella typhimurium LT2
57 DEG10110057 msbA ABC-transporter Salmonella typhimurium LT2
58 DEG10110058 kdsB 2-keto-3-deoxy-octulosonic acid synthetase Salmonella typhimurium LT2
59 DEG10110059 mukF chromosome partitioning Salmonella typhimurium LT2
60 DEG10110060 asnS/asnC asparaginyl tRNA synthetases Salmonella typhimurium LT2