DEG database

Organism Bacteroides fragilis 638R
RefSeq NC_016776
Essential Genes 547
Non-essential Genes 3743
Method Method
Medium Rich medium.
Pubmed 24899126
Reference Yaligara Veeranagouda, et al (2014). "Identification of genes required for the survival of B. fragilis using massive parallel sequencing of a saturated transposon mutant library". BMC Genomics, 15:429.
Distribution of essential genes on leading or lagging strand
Distribution of essential genes cellular location
Search by Sequence (BLAST)
organism in bacteria
No. DEG ID Gene Name Function Organism
1 DEG10340001 - putative SAM superfamily protein Bacteroides fragilis 638R
2 DEG10340002 - hypothetical protein Bacteroides fragilis 638R
3 DEG10340003 - hypothetical protein Bacteroides fragilis 638R
4 DEG10340004 - hypothetical protein Bacteroides fragilis 638R
5 DEG10340005 - hypothetical protein Bacteroides fragilis 638R
6 DEG10340006 ftsX putative cell division protein Bacteroides fragilis 638R
7 DEG10340007 - hypothetical protein Bacteroides fragilis 638R
8 DEG10340008 - putative undecaprenol kinase Bacteroides fragilis 638R
9 DEG10340009 - putative tRNA pseudouridine synthase Bacteroides fragilis 638R
10 DEG10340010 - putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase Bacteroides fragilis 638R
11 DEG10340011 - putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (HPPK) Bacteroides fragilis 638R
12 DEG10340012 metK putative S-adenosylmethionine synthetase Bacteroides fragilis 638R
13 DEG10340013 - putative lysine decarboxylase Bacteroides fragilis 638R
14 DEG10340014 - hypothetical protein Bacteroides fragilis 638R
15 DEG10340015 - uroporphyrinogen-III synthase Bacteroides fragilis 638R
16 DEG10340016 - ribonuclease P component Bacteroides fragilis 638R
17 DEG10340017 tyrS putative tyrosyl-tRNA synthetase 1 Bacteroides fragilis 638R
18 DEG10340018 polA putative DNA polymerase I Bacteroides fragilis 638R
19 DEG10340019 - hypothetical protein Bacteroides fragilis 638R
20 DEG10340020 - hypothetical protein Bacteroides fragilis 638R
21 DEG10340021 ruvB putative holliday junction DNA helicase Bacteroides fragilis 638R
22 DEG10340022 - polysaccharide biosynthesis transmembrane protein Bacteroides fragilis 638R
23 DEG10340023 - hypothetical protein Bacteroides fragilis 638R
24 DEG10340024 - putative sugar isomerase SIS-domain protein Bacteroides fragilis 638R
25 DEG10340025 - putative lysine decarboxylase Bacteroides fragilis 638R
26 DEG10340026 - putative dihydrodipicolinate reductase Bacteroides fragilis 638R
27 DEG10340027 cysS putative cysteinyl-tRNA synthetase Bacteroides fragilis 638R
28 DEG10340028 - hypothetical protein Bacteroides fragilis 638R
29 DEG10340029 - 3-oxoacyl-ACP synthase Bacteroides fragilis 638R
30 DEG10340030 acpP putative acyl carrier protein Bacteroides fragilis 638R
31 DEG10340031 pdxB putative erythronate-4-phosphate dehydrogenase Bacteroides fragilis 638R
32 DEG10340032 - hypothetical protein Bacteroides fragilis 638R
33 DEG10340033 - hypothetical protein Bacteroides fragilis 638R
34 DEG10340034 - putative transport ATP-binding protein Bacteroides fragilis 638R
35 DEG10340035 - putative arginine decarboxylase Bacteroides fragilis 638R
36 DEG10340036 - hypothetical protein Bacteroides fragilis 638R
37 DEG10340037 - hypothetical protein Bacteroides fragilis 638R
38 DEG10340038 - hypothetical protein Bacteroides fragilis 638R
39 DEG10340039 - hypothetical protein Bacteroides fragilis 638R
40 DEG10340040 - hypothetical protein Bacteroides fragilis 638R
41 DEG10340041 - hypothetical protein Bacteroides fragilis 638R
42 DEG10340042 traF putative conjugative transposon protein traF Bacteroides fragilis 638R
43 DEG10340043 traI putative conjugative transposon protein traI Bacteroides fragilis 638R
44 DEG10340044 - putative lysozyme protein found in a conjugation transposase Bacteroides fragilis 638R
45 DEG10340045 - hypothetical protein Bacteroides fragilis 638R
46 DEG10340046 - putative trasnmembrane protein found in conjugate transposon Bacteroides fragilis 638R
47 DEG10340047 - hypothetical protein Bacteroides fragilis 638R
48 DEG10340048 nusA putative N utilization substance protein A Bacteroides fragilis 638R
49 DEG10340049 infB putative translation initiation factor IF-2 Bacteroides fragilis 638R
50 DEG10340050 sufB putative ABC transporter SufB protein Bacteroides fragilis 638R
51 DEG10340051 - hypothetical protein Bacteroides fragilis 638R
52 DEG10340052 sufC putative ABC transporter ATP-binding protein sufC Bacteroides fragilis 638R
53 DEG10340053 sufD putative ABC transporter protein sufD Bacteroides fragilis 638R
54 DEG10340054 sufS putative Cysteine desulfurase sufS Bacteroides fragilis 638R
55 DEG10340055 gyrB DNA gyrase subunit B Bacteroides fragilis 638R
56 DEG10340056 rpsT 30S ribosomal protein S20 Bacteroides fragilis 638R
57 DEG10340057 ftsZ putative cell division protein Bacteroides fragilis 638R
58 DEG10340058 ftsA putative cell division protein Bacteroides fragilis 638R
59 DEG10340059 ftsQ putative cell division protein Bacteroides fragilis 638R
60 DEG10340060 murC putative UDP-N-acetylmuramate--L-alanine ligase Bacteroides fragilis 638R