DEG database

Organism Bacteroides fragilis 638R
RefSeq NC_016776
Essential Genes 547
Non-essential Genes 3743
Method Method
Medium Rich medium.
Pubmed 24899126
Reference Yaligara Veeranagouda, et al (2014). "Identification of genes required for the survival of B. fragilis using massive parallel sequencing of a saturated transposon mutant library". BMC Genomics, 15:429.
Distribution of essential genes on leading or lagging strand
Distribution of essential genes cellular location
Search by Sequence (BLAST)
organism in bacteria
No. DEG ID Gene Name Function Organism
61 DEG10340061 murG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Bacteroides fragilis 638R
62 DEG10340062 murD putative UDP-N-acetylmuramoylalanine--D-glutamate ligase Bacteroides fragilis 638R
63 DEG10340063 mraY putative UDP-N-acetylmuramoyl-pentapeptide:undecaprenyl-phosphate-phosphatase Bacteroides fragilis 638R
64 DEG10340064 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase Bacteroides fragilis 638R
65 DEG10340065 ftsI putative cell division specific transpeptidase/penicillin-binding protein Bacteroides fragilis 638R
66 DEG10340066 - hypothetical protein Bacteroides fragilis 638R
67 DEG10340067 mraW putative S-adenosyl-methyltransferase Bacteroides fragilis 638R
68 DEG10340068 mraZ putative cell division protein Bacteroides fragilis 638R
69 DEG10340069 dut deoxyuridine 5'-triphosphate nucleotidohydrolase Bacteroides fragilis 638R
70 DEG10340070 prfB putative peptide chain release factor Bacteroides fragilis 638R
71 DEG10340071 glyS putative glycyl-tRNA synthetase Bacteroides fragilis 638R
72 DEG10340072 - hypothetical protein Bacteroides fragilis 638R
73 DEG10340073 - hypothetical protein Bacteroides fragilis 638R
74 DEG10340074 asd putative aspartate-semialdehyde dehydrogenase Bacteroides fragilis 638R
75 DEG10340075 - putative Na+/H+ antiporter Bacteroides fragilis 638R
76 DEG10340076 - putative ThiF family protein Bacteroides fragilis 638R
77 DEG10340077 lolD putative ABC transporter ATP-binding protein Bacteroides fragilis 638R
78 DEG10340078 murF putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase Bacteroides fragilis 638R
79 DEG10340079 folP putative dihydropteroate synthase Bacteroides fragilis 638R
80 DEG10340080 - putative transmembrane protein Bacteroides fragilis 638R
81 DEG10340081 - hypothetical protein Bacteroides fragilis 638R
82 DEG10340082 - hypothetical protein Bacteroides fragilis 638R
83 DEG10340083 - putative exported transmembrane protein Bacteroides fragilis 638R
84 DEG10340084 ptaA putative phosphate acetyltransferase Bacteroides fragilis 638R
85 DEG10340085 - hypothetical protein Bacteroides fragilis 638R
86 DEG10340086 - putative UDP-2,3-diacylglucosamine hydrolase Bacteroides fragilis 638R
87 DEG10340087 radC1 putative DNA repair protein Bacteroides fragilis 638R
88 DEG10340088 - putative transmembrane PASTA-domain protein Bacteroides fragilis 638R
89 DEG10340089 rluD ribosomal large subunit pseudouridine synthase Bacteroides fragilis 638R
90 DEG10340090 ddlA putative D-Alanine-D-Alanine-Ligase Bacteroides fragilis 638R
91 DEG10340091 - hypothetical protein Bacteroides fragilis 638R
92 DEG10340092 murI putative glutamate racemase Bacteroides fragilis 638R
93 DEG10340093 ompH putative outer membrane protein Bacteroides fragilis 638R
94 DEG10340094 uppS putative undecaprenyl pyrophosphate synthetase Bacteroides fragilis 638R
95 DEG10340095 - hypothetical protein Bacteroides fragilis 638R
96 DEG10340096 - hypothetical protein Bacteroides fragilis 638R
97 DEG10340097 engC putative ATP/GTP binding protein Bacteroides fragilis 638R
98 DEG10340098 frr putative ribosome recycling factor Bacteroides fragilis 638R
99 DEG10340099 - Hsp-70 cofactor Bacteroides fragilis 638R
100 DEG10340100 pyrH putative uridylate kinase Bacteroides fragilis 638R
101 DEG10340101 - hypothetical protein Bacteroides fragilis 638R
102 DEG10340102 - putative biotin/lipoate A/B protein ligase family protein Bacteroides fragilis 638R
103 DEG10340103 - hypothetical protein Bacteroides fragilis 638R
104 DEG10340104 - hypothetical protein Bacteroides fragilis 638R
105 DEG10340105 - putative phosphatidylserine synthase Bacteroides fragilis 638R
106 DEG10340106 dnaE putative DNA polymerase III alpha subunit Bacteroides fragilis 638R
107 DEG10340107 - hypothetical protein Bacteroides fragilis 638R
108 DEG10340108 - putative ATP/GTP-binding transmembrane protein Bacteroides fragilis 638R
109 DEG10340109 mntC putative ABC transporter membrane protein Bacteroides fragilis 638R
110 DEG10340110 - hypothetical protein Bacteroides fragilis 638R
111 DEG10340111 alaS putative alanyl-tRNA synthetase Bacteroides fragilis 638R
112 DEG10340112 - putative transmembrane peptidase Bacteroides fragilis 638R
113 DEG10340113 - putative transcriptional regulator protein Bacteroides fragilis 638R
114 DEG10340114 - hypothetical protein Bacteroides fragilis 638R
115 DEG10340115 parB putative ParB-like chromosome partitioning protein Bacteroides fragilis 638R
116 DEG10340116 parA putative ParA chromosome partitioning protein Bacteroides fragilis 638R
117 DEG10340117 surE putative stationary-phase survival acid phosphatase Bacteroides fragilis 638R
118 DEG10340118 lpxB putative lipid-A-disaccharide synthase Bacteroides fragilis 638R
119 DEG10340119 cdsA putative phosphatidate cytidylyltransferase Bacteroides fragilis 638R
120 DEG10340120 - putative transmembrane AAA-metalloprotease FtsH Bacteroides fragilis 638R