DoriC

RefSeq

GCF_000157895.3

Accession number

NC_022663.1

DoriC accession number

ORI97227693

OriC length

550 nt

OriC AT content

0.392727

The location of oriC region

3239077..3239626 nt

Browse in NCBI

OriC map

OriC sequences

rpmHGGCGTTCTCCTCGATGTGTCTCGCATACCATCCGCCCGCTCATCGTGCACACTCGGCGGCCGGAGGTGGTCTGGCAGCTGGCCGGCGCGGTCCCCGGACTCTCATCCAGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCTTCGCCTGGTCAAACCTCGCCAGTCCCAACAGACTCAGGCTGAACCGGCCCGCCCCGAAAGATGGCTGCCTCTAACACACTCCATATTCCACGCACATCCAAAGACCGCTAACCGAAAACGAAAGAACTGTTGGCAGCCGCACCGAAAACTGTTAGCTTCGGGCAGTGCTGTTTCGGACTGAAACGGCAGCCGACGATGAAGCGAGGATGGCGGATCGACTAGCTGCCCCGACAGCCGGGTGGTTGGATGCAGCGCGGAGATCGCGGGCCGTGGCCGAAAGGTTACGGAACGTAGTCGACCGTCCTTTCCACAACTGTGGATAACCATGTGGACAGTTTGCTATTCGCCGACAATTGCACCTCGATGTCGGACCAGGGGGATGCGTCGdnaA

rpmhGGCGTTCTCCTCGATGTGTCTCGCATACCATCCGCCCGCTCATCGTGCACACTCGGCGGCCGGAGGTGGTCTGGCAGCTGGCCGGCGCGGTCCCCGGACTCTCATCCAGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCTTCGCCTGGTCAAACCTCGCCAGTCCCAACAGACTCAGGCTGAACCGGCCCGCCCCGAAAGATGGCTGCCTCTAACACACTCCATATTCCACGCACATCCAAAGACCGCTAACCGAAAACGAAAGAACTGTTGGCAGCCGCACCGAAAACTGTTAGCTTCGGGCAGTGCTGTTTCGGACTGAAACGGCAGCCGACGATGAAGCGAGGATGGCGGATCGACTAGCTGCCCCGACAGCCGGGTGGTTGGATGCAGCGCGGAGATCGCGGGCCGTGGCCGAAAGGTTACGGAACGTAGTCGACCGTCCTTTCCACAACTGTGGATAACCATGTGGACAGTTTGCTATTCGCCGACAATTGCACCTCGATGTCGGACCAGGGGGATGCGTCGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif ACTGTTDG

Start	P-value		Site
139	6.99e-06	CTTTCGGGCG	ACTGTTTG	AGGGTACTGA
311	1.46e-05	CGCACCGAAA	ACTGTTAG	CTTCGGGCAG
495	3.33e-05	AACCATGTGG	ACAGTTTG	CTATTCGCCG
289	3.33e-05	AAACGAAAGA	ACTGTTGG	CAGCCGCACC

Motif CCGAAA

Start	P-value		Site
437	2.49e-04	CGGGCCGTGG	CCGAAA	GGTTACGGAA
305	2.49e-04	GGCAGCCGCA	CCGAAA	ACTGTTAGCT
275	2.49e-04	AGACCGCTAA	CCGAAA	ACGAAAGAAC
217	2.49e-04	CCGGCCCGCC	CCGAAA	GATGGCTGCC
341	3.99e-04	CTGTTTCGGA	CTGAAA	CGGCAGCCGA

Motif TKCWCCTCGATGT

Start	P-value		Site
5	7.36e-09	GGCG	TTCTCCTCGATGT	GTCTCGCATA
518	3.97e-08	CGCCGACAAT	TGCACCTCGATGT	CGGACCAGGG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI92310403	79.636	550	85	19	5	550	5	531	0.0	370
ORI94040332	76.008	471	67	31	57	500	76	527	0.0	202
ORI96010627	89.231	130	9	4	57	183	282	409	1.81e-39	158
ORI96010623	89.231	130	9	4	57	183	65	192	1.81e-39	158
ORI95011027	89.231	130	9	4	57	183	261	388	1.81e-39	158
ORI95011026	88.55	131	8	4	57	183	300	427	8.4e-38	152
ORI96010622	88.55	131	8	4	57	183	300	427	8.4e-38	152
ORI60040083	86.364	132	10	6	57	183	65	193	2.35e-33	137