RefSeq GCF_000171795.2
Accession number NZ_CP005388.1
DoriC accession number ORI97207588
OriC length 159 nt
OriC AT content 0.779874
The location of oriC region 1324..1482 nt
Browse in NCBI
OriC map
OriC sequences
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAAAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAAAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAAAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAAAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAAAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAAAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAAAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaaGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAAAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnan
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAAAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAAAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
dnaAGTGAAAGGATGTGAAAAATAAATTCTAGAGTGTGAAAAAAAGAAATTAAGCAAAGTATGATAAAATACAAATTTGATTATTTTGCTTTGAAAAATTTCACAATTTCAACAAGCTTATTATTACAACGAATTTAAAATTAAAATAAACCAAGGAGAAAAAdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif ACAASS

StartP-valueSite
1473.54e-05TTAAAATAAACCAAGGAGAAAAA
1225.40e-04GCTTATTATTACAACGAATTTAAAAT
1085.40e-04CACAATTTCAACAAGCTTATTATTAC

Motif GRRTGTG

StartP-valueSite
283.53e-05ATAAATTCTAGAGTGTGAAAAAAAGAA
73.53e-05GTGAAAGGATGTGAAAAATAAAT

Motif TTTGMTT

StartP-valueSite
812.16e-05ATTTGATTATTTTGCTTTGAAAAATTT
721.45e-04AAAATACAAATTTGATTATTTTGCTTT
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96010655 100.0 159 0 0 1 159 1 159 0.0 294
ORI96010656 100.0 159 0 0 1 159 1 159 0.0 294
ORI70010266 100.0 159 0 0 1 159 1 159 0.0 294
ORI10010008 100.0 159 0 0 1 159 1 159 0.0 294
ORI96010654 99.371 159 1 0 1 159 1 159 0.0 289
ORI96010688 99.371 159 1 0 1 159 1 159 0.0 289
ORI94040277 99.371 159 1 0 1 159 1 159 0.0 289
ORI92010341 99.371 159 1 0 1 159 1 159 0.0 289
ORI10010064 99.371 159 1 0 1 159 1 159 0.0 289
ORI96010687 98.742 159 2 0 1 159 1 159 0.0 283
ORI92240122 98.113 159 3 0 1 159 1 159 0.0 278