RefSeq GCF_000172795.2
Accession number NZ_CP020947.1
DoriC accession number ORI97020287
OriC length 401 nt
OriC AT content 0.518703
The location of oriC region 1..401 nt
Browse in NCBI
OriC map
OriC sequences
hemEGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGTGCCGGCAAAAAACATTGGGGTGAATTTCTCCGCCCTGTCGAAAATCCGGGGAGAAGCCGAATCTGAAAATGATTCCAAATCCTTCCGGGAAACTGATTTTATGCGTGGCTGTGGATAAGCTGTGGACCTGCATCTGCCAACGCAACTTGGTCCTCGTCATCCACAGGGCCCGATGAAACCGATCTGCAGAATTCGAATTGTGGATAAGGCGGCATGTTTTCCCTTGCCCGAGACCGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGCGGAAAATAAC-
hemEGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGTGCCGGCAAAAAACATTGGGGTGAATTTCTCCGCCCTGTCGAAAATCCGGGGAGAAGCCGAATCTGAAAATGATTCCAAATCCTTCCGGGAAACTGATTTTATGCGTGGCTGTGGATAAGCTGTGGACCTGCATCTGCCAACGCAACTTGGTCCTCGTCATCCACAGGGCCCGATGAAACCGATCTGCAGAATTCGAATTGTGGATAAGGCGGCATGTTTTCCCTTGCCCGAGACCGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGCGGAAAATAAC-
hemEGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGTGCCGGCAAAAAACATTGGGGTGAATTTCTCCGCCCTGTCGAAAATCCGGGGAGAAGCCGAATCTGAAAATGATTCCAAATCCTTCCGGGAAACTGATTTTATGCGTGGCTGTGGATAAGCTGTGGACCTGCATCTGCCAACGCAACTTGGTCCTCGTCATCCACAGGGCCCGATGAAACCGATCTGCAGAATTCGAATTGTGGATAAGGCGGCATGTTTTCCCTTGCCCGAGACCGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGCGGAAAATAAC-
hemEGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGTGCCGGCAAAAAACATTGGGGTGAATTTCTCCGCCCTGTCGAAAATCCGGGGAGAAGCCGAATCTGAAAATGATTCCAAATCCTTCCGGGAAACTGATTTTATGCGTGGCTGTGGATAAGCTGTGGACCTGCATCTGCCAACGCAACTTGGTCCTCGTCATCCACAGGGCCCGATGAAACCGATCTGCAGAATTCGAATTGTGGATAAGGCGGCATGTTTTCCCTTGCCCGAGACCGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGCGGAAAATAAC-
hemEGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGTGCCGGCAAAAAACATTGGGGTGAATTTCTCCGCCCTGTCGAAAATCCGGGGAGAAGCCGAATCTGAAAATGATTCCAAATCCTTCCGGGAAACTGATTTTATGCGTGGCTGTGGATAAGCTGTGGACCTGCATCTGCCAACGCAACTTGGTCCTCGTCATCCACAGGGCCCGATGAAACCGATCTGCAGAATTCGAATTGTGGATAAGGCGGCATGTTTTCCCTTGCCCGAGACCGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGCGGAAAATAAC-
hemEGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGTGCCGGCAAAAAACATTGGGGTGAATTTCTCCGCCCTGTCGAAAATCCGGGGAGAAGCCGAATCTGAAAATGATTCCAAATCCTTCCGGGAAACTGATTTTATGCGTGGCTGTGGATAAGCTGTGGACCTGCATCTGCCAACGCAACTTGGTCCTCGTCATCCACAGGGCCCGATGAAACCGATCTGCAGAATTCGAATTGTGGATAAGGCGGCATGTTTTCCCTTGCCCGAGACCGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGCGGAAAATAAC-
hemEGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGTGCCGGCAAAAAACATTGGGGTGAATTTCTCCGCCCTGTCGAAAATCCGGGGAGAAGCCGAATCTGAAAATGATTCCAAATCCTTCCGGGAAACTGATTTTATGCGTGGCTGTGGATAAGCTGTGGACCTGCATCTGCCAACGCAACTTGGTCCTCGTCATCCACAGGGCCCGATGAAACCGATCTGCAGAATTCGAATTGTGGATAAGGCGGCATGTTTTCCCTTGCCCGAGACCGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGCGGAAAATAAC-
hemeGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGTGCCGGCAAAAAACATTGGGGTGAATTTCTCCGCCCTGTCGAAAATCCGGGGAGAAGCCGAATCTGAAAATGATTCCAAATCCTTCCGGGAAACTGATTTTATGCGTGGCTGTGGATAAGCTGTGGACCTGCATCTGCCAACGCAACTTGGTCCTCGTCATCCACAGGGCCCGATGAAACCGATCTGCAGAATTCGAATTGTGGATAAGGCGGCATGTTTTCCCTTGCCCGAGACCGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGCGGAAAATAAC-
hemEGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGTGCCGGCAAAAAACATTGGGGTGAATTTCTCCGCCCTGTCGAAAATCCGGGGAGAAGCCGAATCTGAAAATGATTCCAAATCCTTCCGGGAAACTGATTTTATGCGTGGCTGTGGATAAGCTGTGGACCTGCATCTGCCAACGCAACTTGGTCCTCGTCATCCACAGGGCCCGATGAAACCGATCTGCAGAATTCGAATTGTGGATAAGGCGGCATGTTTTCCCTTGCCCGAGACCGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGCGGAAAATAAC-
hemEGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGTGCCGGCAAAAAACATTGGGGTGAATTTCTCCGCCCTGTCGAAAATCCGGGGAGAAGCCGAATCTGAAAATGATTCCAAATCCTTCCGGGAAACTGATTTTATGCGTGGCTGTGGATAAGCTGTGGACCTGCATCTGCCAACGCAACTTGGTCCTCGTCATCCACAGGGCCCGATGAAACCGATCTGCAGAATTCGAATTGTGGATAAGGCGGCATGTTTTCCCTTGCCCGAGACCGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGCGGAAAATAAC-
hemEGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGTGCCGGCAAAAAACATTGGGGTGAATTTCTCCGCCCTGTCGAAAATCCGGGGAGAAGCCGAATCTGAAAATGATTCCAAATCCTTCCGGGAAACTGATTTTATGCGTGGCTGTGGATAAGCTGTGGACCTGCATCTGCCAACGCAACTTGGTCCTCGTCATCCACAGGGCCCGATGAAACCGATCTGCAGAATTCGAATTGTGGATAAGGCGGCATGTTTTCCCTTGCCCGAGACCGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGCGGAAAATAAC-
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TGTGGANAAGC

StartP-valueSite
2192.06e-07TATGCGTGGCTGTGGATAAGCTGTGGACCTG
3081.55e-06GAATTCGAATTGTGGATAAGGCGGCATGTTT
1561.11e-05GTCGAAAATCCGGGGAGAAGCCGAATCTGAA
2301.64e-05GTGGATAAGCTGTGGACCTGCATCTGCCAAC
1452.28e-05TTCTCCGCCCTGTCGAAAATCCGGGGAGAAG

Motif CDCCGCCS

StartP-valueSite
3491.24e-05GAGACCGCCTCGCCGCCGTAGCTCTGTT
864.06e-05AAAATCCATCCACCGCCGATGCCATTTG
1378.61e-05GGGTGAATTTCTCCGCCCTGTCGAAAAT

Motif CGGVAAA

StartP-valueSite
3915.71e-05CAACAGGCAGCGGAAAATAAC
1951.08e-04CAAATCCTTCCGGGAAACTGATTTTAT
1121.64e-04TGTCGCGTGCCGGCAAAAAACATTGGG
1722.30e-04GAAGCCGAATCTGAAAATGATTCCAAA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI92740160 87.781 401 44 5 1 399 25 422 0.0 464
ORI93040198 83.951 405 53 12 1 399 25 423 0.0 377
ORI40030119 83.663 404 54 9 2 399 2 399 0.0 370
ORI92540152 82.921 404 59 10 1 399 73 471 0.0 355
ORI10040059 81.951 410 55 16 1 401 73 472 0.0 329
ORI95030437 90.278 72 6 1 15 86 17 87 3.71e-20 94
ORI92730253 89.855 69 7 0 18 86 18 86 4.8e-19 90
ORI96000428 87.5 72 5 4 17 86 19 88 2.89e-16 81