RefSeq GCF_000176835.2
Accession number NC_021591.1
DoriC accession number ORI97010372
OriC length 381 nt
OriC AT content 0.572178
The location of oriC region 5295218..5295598 nt
Browse in NCBI
OriC map
OriC sequences
mioCTTCGCTCAAAGATCACGCGAACGATTGTGGATAACTATGCTTGAAAGCAGGGTAAAAGCAGTAGTTATCCCAATAACAACCCTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCAACAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATCCGCTGATCTCACTCGCGAATAATCACTTATCCACAGAGGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTACCTAAGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCTCCCACCCCAGGGCAAACAACGATCGTTCGCAATACGGCGAGGTGCAGTACCgidA
mioCTTCGCTCAAAGATCACGCGAACGATTGTGGATAACTATGCTTGAAAGCAGGGTAAAAGCAGTAGTTATCCCAATAACAACCCTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCAACAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATCCGCTGATCTCACTCGCGAATAATCACTTATCCACAGAGGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTACCTAAGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCTCCCACCCCAGGGCAAACAACGATCGTTCGCAATACGGCGAGGTGCAGTACCgidA
mioCTTCGCTCAAAGATCACGCGAACGATTGTGGATAACTATGCTTGAAAGCAGGGTAAAAGCAGTAGTTATCCCAATAACAACCCTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCAACAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATCCGCTGATCTCACTCGCGAATAATCACTTATCCACAGAGGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTACCTAAGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCTCCCACCCCAGGGCAAACAACGATCGTTCGCAATACGGCGAGGTGCAGTACCgidA
mioCTTCGCTCAAAGATCACGCGAACGATTGTGGATAACTATGCTTGAAAGCAGGGTAAAAGCAGTAGTTATCCCAATAACAACCCTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCAACAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATCCGCTGATCTCACTCGCGAATAATCACTTATCCACAGAGGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTACCTAAGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCTCCCACCCCAGGGCAAACAACGATCGTTCGCAATACGGCGAGGTGCAGTACCgidA
mioCTTCGCTCAAAGATCACGCGAACGATTGTGGATAACTATGCTTGAAAGCAGGGTAAAAGCAGTAGTTATCCCAATAACAACCCTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCAACAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATCCGCTGATCTCACTCGCGAATAATCACTTATCCACAGAGGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTACCTAAGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCTCCCACCCCAGGGCAAACAACGATCGTTCGCAATACGGCGAGGTGCAGTACCgidA
mioCTTCGCTCAAAGATCACGCGAACGATTGTGGATAACTATGCTTGAAAGCAGGGTAAAAGCAGTAGTTATCCCAATAACAACCCTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCAACAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATCCGCTGATCTCACTCGCGAATAATCACTTATCCACAGAGGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTACCTAAGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCTCCCACCCCAGGGCAAACAACGATCGTTCGCAATACGGCGAGGTGCAGTACCgidA
mioCTTCGCTCAAAGATCACGCGAACGATTGTGGATAACTATGCTTGAAAGCAGGGTAAAAGCAGTAGTTATCCCAATAACAACCCTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCAACAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATCCGCTGATCTCACTCGCGAATAATCACTTATCCACAGAGGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTACCTAAGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCTCCCACCCCAGGGCAAACAACGATCGTTCGCAATACGGCGAGGTGCAGTACCgidA
miocTTCGCTCAAAGATCACGCGAACGATTGTGGATAACTATGCTTGAAAGCAGGGTAAAAGCAGTAGTTATCCCAATAACAACCCTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCAACAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATCCGCTGATCTCACTCGCGAATAATCACTTATCCACAGAGGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTACCTAAGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCTCCCACCCCAGGGCAAACAACGATCGTTCGCAATACGGCGAGGTGCAGTACCgida
mioCTTCGCTCAAAGATCACGCGAACGATTGTGGATAACTATGCTTGAAAGCAGGGTAAAAGCAGTAGTTATCCCAATAACAACCCTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCAACAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATCCGCTGATCTCACTCGCGAATAATCACTTATCCACAGAGGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTACCTAAGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCTCCCACCCCAGGGCAAACAACGATCGTTCGCAATACGGCGAGGTGCAGTACCgidA
mioCTTCGCTCAAAGATCACGCGAACGATTGTGGATAACTATGCTTGAAAGCAGGGTAAAAGCAGTAGTTATCCCAATAACAACCCTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCAACAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATCCGCTGATCTCACTCGCGAATAATCACTTATCCACAGAGGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTACCTAAGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCTCCCACCCCAGGGCAAACAACGATCGTTCGCAATACGGCGAGGTGCAGTACCgidA
mioCTTCGCTCAAAGATCACGCGAACGATTGTGGATAACTATGCTTGAAAGCAGGGTAAAAGCAGTAGTTATCCCAATAACAACCCTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCAACAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATCCGCTGATCTCACTCGCGAATAATCACTTATCCACAGAGGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTCTTTTAATTACCTAAGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCTCCCACCCCAGGGCAAACAACGATCGTTCGCAATACGGCGAGGTGCAGTACCgidA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif AMGATCCT

StartP-valueSite
1641.79e-05TTCACAGCTAACGATCCTCCTTAATCCG
2864.07e-05TTAATTACCTAAGATCCTGACCACTTGG
3495.36e-05AGGGCAAACAACGATCGTTCGCAATACG
2226.36e-05ACAGAGGATCGCGATCCTAATAAGAGAT
2651.41e-04TTAAATAAAAAAGATCTTCTTTTAATTA

Motif GCKTAWAAGCA

StartP-valueSite
1278.59e-07TTAGATCCCAGCTTATAAGCAACAGGATCAC
502.38e-06CTTGAAAGCAGGGTAAAAGCAGTAGTTATCC
392.61e-06GGATAACTATGCTTGAAAGCAGGGTAAAAGC
1941.14e-05GATCTCACTCGCGAATAATCACTTATCCACA

Motif CTWGGTCG

StartP-valueSite
2995.69e-06ATCCTGACCACTTGGTCGATCGACTAAA
821.29e-05AATAACAACCCTAGGTCGCTTTTTGTCC
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI92220054 95.187 374 16 2 6 378 6 378 0.0 590
ORI80020043 86.579 380 46 5 4 381 377 1 0.0 414
ORI94030361 86.089 381 46 7 4 381 377 1 0.0 403
ORI10020019 86.089 381 46 7 4 381 377 1 0.0 403
ORI96000376 85.677 384 48 7 1 381 1 380 0.0 398
ORI96000375 85.827 381 47 7 4 381 377 1 0.0 398
ORI96000374 85.827 381 47 7 4 381 377 1 0.0 398
ORI93020117 85.827 381 47 7 4 381 377 1 0.0 398
ORI92520061 85.677 384 48 7 1 381 1 380 0.0 398
ORI92020050 85.864 382 45 9 4 381 377 1 0.0 398
ORI90020045 85.677 384 48 7 1 381 1 380 0.0 398
ORI20020031 85.827 381 47 7 4 381 377 1 0.0 398
ORI20020030 85.827 381 47 7 4 381 377 1 0.0 398
ORI92320057 85.455 385 47 9 1 381 1 380 0.0 392
ORI10020008 85.34 382 48 8 4 381 378 1 0.0 388
ORI92220056 85.039 381 50 7 4 381 377 1 0.0 381
ORI96020517 85.304 313 40 6 1 310 1 310 0.0 318
ORI96020516 85.484 310 39 6 4 310 308 2 0.0 318
ORI10020018 86.833 281 32 5 4 282 296 19 0.0 309
ORI10030027 86.833 281 32 5 4 282 296 19 0.0 309
ORI10030033 82.749 342 44 15 26 360 369 36 0.0 291
ORI96000435 82.405 341 46 14 26 360 368 36 0.0 285
ORI93020095 82.133 347 43 19 23 360 20 356 0.0 279
ORI96000370 78.457 376 62 18 13 378 10 376 0.0 228
ORI95030439 78.4 375 64 16 13 378 10 376 0.0 228
ORI94030349 78.457 376 62 18 13 378 10 376 0.0 228
ORI94030317 78.356 365 62 16 26 381 357 1 0.0 220
ORI93020094 78.022 364 66 13 25 381 22 378 0.0 217
ORI93020110 77.869 366 62 17 26 381 23 379 0.0 209
ORI96000391 79.791 287 45 13 50 329 333 53 0.0 196
ORI93020092 76.839 367 64 20 26 381 22 378 0.0 187
ORI93020116 81.356 236 36 8 98 329 283 52 0.0 185
ORI93020115 81.356 236 36 8 98 329 283 52 0.0 185
ORI93020097 80.932 236 39 6 99 331 280 48 0.0 182
ORI94030310 80.408 245 39 8 99 339 277 38 1.4013e-45 178
ORI96000387 76.829 328 54 18 45 357 43 363 7.34981e-42 165
ORI93020109 76.829 328 54 18 45 357 43 363 7.34981e-42 165
ORI10020016 79.832 238 39 8 100 332 281 48 7.34981e-42 165
ORI93020091 74.848 330 57 21 45 357 43 363 3.47e-30 126