DoriC

RefSeq

GCF_000219085.2

Accession number

NZ_CP053749.1

DoriC accession number

ORI97209077

OriC length

605 nt

OriC AT content

0.401653

The location of oriC region

4895151..4895755 nt

Browse in NCBI

OriC map

OriC sequences

rpmHGACGTTCTCCTCGTTGTTTGCCGTCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTTCGACCGGAGGGTGGTCTTGCTGCTCCTGGCCGGCGCGGTCCCCAAGTGGTGCTGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTAATGACCAGCCTTCGCCTGGTCAAACCTGGCCTGCCGCAACGCAGCCGCGCCCGGCCGGTACCGAGATTTCGCATTCCGCTCCCGCCAGCCACTCGGGTCAACTAACCTACCGAGCCGAAGCAAGCCCCAGTCACCCTAAACGACCGGATTGGAGTACAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAGTCGTTTTAGACTACGAACAGCGCTCGACAACGAAGCGAGGATGGTAGATCAACTAGCTGCCTAGACAACCTTTTTCGGGTTTTCTTCCAGCGCGGAGATCGCGGGCCGTCGCCGGTAGGTTGTGGCTCGCATACGATCATCCTGTCCACACCTGTGTATAACTATGTGGACAGTTGTTTTGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAATCAGGGAGATGCGTCGdnaA

rpmhGACGTTCTCCTCGTTGTTTGCCGTCCGGCCGCTCAGACGGTTCGCTTCGGGCTCGTCTGCGGTTCGACCGGAGGGTGGTCTTGCTGCTCCTGGCCGGCGCGGTCCCCAAGTGGTGCTGGGTCGCAGCCGTATCGCCGACTTTCGGGCGACTGTTTGAGGGTAATGACCAGCCTTCGCCTGGTCAAACCTGGCCTGCCGCAACGCAGCCGCGCCCGGCCGGTACCGAGATTTCGCATTCCGCTCCCGCCAGCCACTCGGGTCAACTAACCTACCGAGCCGAAGCAAGCCCCAGTCACCCTAAACGACCGGATTGGAGTACAGCGGAACGGTTGGCAGCCGCACGGAAAACTGTTAGCTTCTGCCAAGTCGTTTTAGACTACGAACAGCGCTCGACAACGAAGCGAGGATGGTAGATCAACTAGCTGCCTAGACAACCTTTTTCGGGTTTTCTTCCAGCGCGGAGATCGCGGGCCGTCGCCGGTAGGTTGTGGCTCGCATACGATCATCCTGTCCACACCTGTGTATAACTATGTGGACAGTTGTTTTGTCGCCAAGCGTGAGTTGTACTTCGACCCGGGACGTTCGAGAATCAGGGAGATGCGTCGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif CGAMBSGWKGRKGGTANWKC

Start	P-value		Site
397	2.59e-09	CGCTCGACAA	CGAAGCGAGGATGGTAGATC	AACTAGCTGC
65	1.60e-08	GTCTGCGGTT	CGACCGGAGGGTGGTCTTGC	TGCTCCTGGC
303	1.77e-08	TCACCCTAAA	CGACCGGATTGGAGTACAGC	GGAACGGTTG
551	7.62e-08	TGTTTTGTCG	CCAAGCGTGAGTTGTACTTC	GACCCGGGAC
147	8.09e-08	GACTTTCGGG	CGACTGTTTGAGGGTAATGA	CCAGCCTTCG

Motif AGCYGYVTVGACAACTKTT

Start	P-value		Site
335	1.47e-09	AACGGTTGGC	AGCCGCACGGAAAACTGTT	AGCTTCTGCC
421	2.28e-09	TAGATCAACT	AGCTGCCTAGACAACCTTT	TTCGGGTTTT
526	1.72e-08	ACCTGTGTAT	AACTATGTGGACAGTTGTT	TTGTCGCCAA
125	3.15e-08	GCTGGGTCGC	AGCCGTATCGCCGACTTTC	GGGCGACTGT

Motif TACGAWCA

Start	P-value		Site
378	6.37e-06	CGTTTTAGAC	TACGAACA	GCGCTCGACA
498	1.42e-05	GTGGCTCGCA	TACGATCA	TCCTGTCCAC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI60040083	99.008	605	5	1	1	605	1	604	0.0	1083
ORI96010627	89.803	608	53	8	1	605	218	819	0.0	771
ORI95011026	89.803	608	53	8	1	605	236	837	0.0	771
ORI96010622	89.803	608	53	8	1	605	236	837	0.0	771
ORI95011027	89.474	608	55	8	1	605	197	798	0.0	760
ORI96010623	89.327	609	54	11	1	605	1	602	0.0	754
ORI94040332	84.127	126	15	5	69	193	80	201	3.37e-27	117