DoriC

RefSeq

GCF_014217335.1

Accession number

NZ_CP060092.1

DoriC accession number

ORI97024506

OriC length

720 nt

OriC AT content

0.647222

The location of oriC region

869872..870591 nt

Browse in NCBI

OriC map

OriC sequences

gidATTTAACAACTTGCCAGTAGGAGCATTAATTCGGTCGTGCATTATAGGGTTTGCGTTCAGAAATAGAACGGCTTTTTTATTTCAGAAATTTGAGGTGTTAATAGTAAAAATATAGATTAAGAATATATGAATATATAGATAAAGTTATTTTAGTTATTAATGTTAGTACCTTACTTTTTAGTGGATAACCCAATTTTATTCTTATATTTCAAGTGTTTATCGTAAGTGTAAGAGCACTATAAAAGAGGTATTAGCTGATGAACTGCTGCATACAAGCTGTAGTGAAAAACAGGGGTTACCCACGTGGTTAAAAATGCAGCATTATTTCGGTGGATAAAAAAAAATGTTCTCACCAACTTGTTAGGGGGTTATTAAGAGGTTGTTATATTTCGCACAAAATATCACCAGGGTGTTTGGCTAGCATGTGAGTTTCTTGTGTTTATCCTCTTATTTAAACGTTTAGCGTGTTTTTTTCGTGTGTTCGAATTGTGGATAAGCTGTGTCTTGGTGTGCATAAGTTTTATGAATGCATTTTTTTATTTCTAAAACAAATTTTTATAGGCGGTTAAACTTGCGTCCACGCATTGATGATTGGGGCGGTTTTATAGAAATGATTTGGCTTGAGGTGGGTTGGATAATTCAGCGTAACCAAGAAATGCGTGTATTCGAGTGAAAGGAGTGGAGGAGGGACCGTCAATTTGAGTGGGGAAGAGGTCTGTGT-

gidaTTTAACAACTTGCCAGTAGGAGCATTAATTCGGTCGTGCATTATAGGGTTTGCGTTCAGAAATAGAACGGCTTTTTTATTTCAGAAATTTGAGGTGTTAATAGTAAAAATATAGATTAAGAATATATGAATATATAGATAAAGTTATTTTAGTTATTAATGTTAGTACCTTACTTTTTAGTGGATAACCCAATTTTATTCTTATATTTCAAGTGTTTATCGTAAGTGTAAGAGCACTATAAAAGAGGTATTAGCTGATGAACTGCTGCATACAAGCTGTAGTGAAAAACAGGGGTTACCCACGTGGTTAAAAATGCAGCATTATTTCGGTGGATAAAAAAAAATGTTCTCACCAACTTGTTAGGGGGTTATTAAGAGGTTGTTATATTTCGCACAAAATATCACCAGGGTGTTTGGCTAGCATGTGAGTTTCTTGTGTTTATCCTCTTATTTAAACGTTTAGCGTGTTTTTTTCGTGTGTTCGAATTGTGGATAAGCTGTGTCTTGGTGTGCATAAGTTTTATGAATGCATTTTTTTATTTCTAAAACAAATTTTTATAGGCGGTTAAACTTGCGTCCACGCATTGATGATTGGGGCGGTTTTATAGAAATGATTTGGCTTGAGGTGGGTTGGATAATTCAGCGTAACCAAGAAATGCGTGTATTCGAGTGAAAGGAGTGGAGGAGGGACCGTCAATTTGAGTGGGGAAGAGGTCTGTGT-

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GSWGCATWAWWKCKGTVGWKAAWWAHARRKKTTVYSHHC

Start	P-value		Site
264	4.37e-19	CTGATGAACT	GCTGCATACAAGCTGTAGTGAAAAACAGGGGTTACCCAC	GTGGTTAAAA
19	3.35e-17	CTTGCCAGTA	GGAGCATTAATTCGGTCGTGCATTATAGGGTTTGCGTTC	AGAAATAGAA
315	5.14e-17	GGTTAAAAAT	GCAGCATTATTTCGGTGGATAAAAAAAAATGTTCTCACC	AACTTGTTAG

Motif GGCGGT

Start	P-value		Site
595	1.29e-04	TGATGATTGG	GGCGGT	TTTATAGAAA
560	1.29e-04	AATTTTTATA	GGCGGT	TAAACTTGCG

Motif CGTGTRTTCGA

Start	P-value		Site
474	1.98e-07	GTGTTTTTTT	CGTGTGTTCGA	ATTGTGGATA
658	4.41e-07	CCAAGAAATG	CGTGTATTCGA	GTGAAAGGAG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score