DoriC

RefSeq

NC_001889

DoriC accession number

pORI00000355

OriC length

1675 nt

OriC AT content

0.8179

The location of oriC region

13281..14955 nt

Browse in NCBI

OriC map

OriC sequences

TTTGCATATAAAAAAATAAAAAATAAAAAATAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAATAAAAAAAAAAAAGAAATATTTAAAAATTTCAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAATTTTTTAAAAAAAAGTAAATCATTGAAAAAAAGTTATAACTAGCTTTGTTTTTTATAATTTTAACATATTTGTAAATAAATTAAAATTGTGAACCAAATGAGATATATATATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTCTAAGTCTTTAAAAAAAAGTAAATCACCCAAAAAAAGTTATAACTAGCTTTGTTTTTTATAATTTTTACATATTCGTTAATAACTTTTATTTTTAAACCATATGAGATTACATCGTCCCGTTGAAAAAAAAAAAAATTTTCAATTTTTGTTTCTTTTTTTTTTTTAATATGGAGAAAAGTTAAAAAATTAGAATATTTTAAAATCAAATTTCTAAGTTATTCTTTGTTCGTTTCAACGAGCGATTTTTGGATATTTCATTCAAAATGAGTTTTTAAGATGTTATCATAAAAAACCCAATGAAAATAAAGTAAGTATAATTTTTTTGGAAAACAGTCTGACTGTGATTTCAGTCGGACTGTTTTTTCAACTTTTTATAGTTTGGTCGTACGAAGCTGAAAGTAATTTAAAACGATTTAGAATATCAATTAAGGTATATCTTCACTTTTTTAATATATAAATAACCAATTTAAAAATTTTGTCAAAACAGTCAGACTGTTTTTTCAGTCCGACTGTTTTTTGAAAACAGTCAGACTGTTTTTTCAGTCCGACTGTTTTCATAAAACAGTCAGACTGTTTTTCAAAATTTTTAAATTGAACTCTACACTAAATATTTATATATATTTTACCTTAAATTTCGTTTTTAAATCGTTTTAAATTACTTTCAGCTTCGTACGACCAAACTATAAAAAGTTGAAAAAACAGTCCGACTGAAATCACAGTCAGACTGTTTTCCAAAAAAATTATACTTACTTTATTTTCATTGGGTTTTTTATGATAACACCTTAAAAACTCATTTTGAATGAAATATCCAAAAATCGCTCGTTGAAACGAACAAAGAATAACTTAGAAATTTGATTTTAAAATATTCTAATTTTTTAACTTTTCTCCATATTAAAAAAAAAAAAGAAACAAAAATTGAAAATTTTTTTTTTTTTCAACGGGACGATGTAATCTCATATGGTTTAAAAATAAAAGTTATTAACGAATATGTAAAAATTATAAAAAACAAAGCTAGTTATAACTTTTTTTGGGTGATTTACTTTTTTTTAAAGACTTAGAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATATATATCTCATTTGGTTCACAATTTTAATTTATTTACAAATACGTTAAAATTATAAAAAACAAAGCTAGTTATAACTTTTTTTCGATGATTTACTTTTTTTAAATACTTTGGTAAATATTTGATTTTTTTTTTTTTTTTTTTTGCCTTTTTTTTGAAATTTTTAAAAATTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTAATTTTTAATTTTTTTTTTTTATTTCGAAAAAACCATTTTTTTATTTGTTTTTCGATATCACA

AT-rich region

The information of repeat sequences

Motif ACAGTCAGACTGTTWTTTCAGTCNGACTG

Start	P-value		Site
805	6.86e-20	TTTTTTGAAA	ACAGTCAGACTGTTTTTTCAGTCCGACTG	TTTTCATAAA
766	6.86e-20	TTTTGTCAAA	ACAGTCAGACTGTTTTTTCAGTCCGACTG	TTTTTTGAAA
612	1.12e-18	TTTTTGGAAA	ACAGTCTGACTGTGATTTCAGTCGGACTG	TTTTTTCAAC
981	1.30e-16	AGTTGAAAAA	ACAGTCCGACTGAAATCACAGTCAGACTG	TTTTCCAAAA
844	1.83e-11	TTTTCATAAA	ACAGTCAGACTGTTTTTCAAAATTTTTAA	ATTGAACTCT

Motif AAAAKTAWAWMAAWCAAARHWAGTTATAACTWDHTTTSKWTKWTWTAMTT

Start	P-value		Site
296	1.81e-20	GTCTTTAAAA	AAAAGTAAATCACCCAAAAAAAGTTATAACTAGCTTTGTTTTTTATAATT	TTTACATATT
1275	4.26e-20	CGAATATGTA	AAAATTATAAAAAACAAAGCTAGTTATAACTTTTTTTGGGTGATTTACTT	TTTTTTAAAG
1433	2.61e-19	CAAATACGTT	AAAATTATAAAAAACAAAGCTAGTTATAACTTTTTTTCGATGATTTACTT	TTTTTAAATA
140	1.49e-18	TTTTTTAAAA	AAAAGTAAATCATTGAAAAAAAGTTATAACTAGCTTTGTTTTTTATAATT	TTAACATATT
456	9.22e-14	TAATATGGAG	AAAAGTTAAAAAATTAGAATATTTTAAAATCAAATTTCTAAGTTATTCTT	TGTTCGTTTC

Motif SWTCGTWCVAACGAR

Start	P-value		Site
507	1.42e-08	GTTATTCTTT	GTTCGTTTCAACGAG	CGATTTTTGG
663	1.59e-08	TTTATAGTTT	GGTCGTACGAAGCTG	AAAGTAATTT
1100	3.46e-08	TCCAAAAATC	GCTCGTTGAAACGAA	CAAAGAATAA
948	5.06e-08	TTACTTTCAG	CTTCGTACGACCAAA	CTATAAAAAG
392	1.82e-07	TATGAGATTA	CATCGTCCCGTTGAA	AAAAAAAAAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000355	100.0	1675	0	0	1	1675	1	1675	0.0	3094
pORI00000355	91.843	1655	63	32	10	1628	1628	10	0.0	2242
pORI00000355	84.106	151	22	2	1391	1540	1233	1382	3.4e-35	145
pORI00000355	84.106	151	18	4	1391	1540	389	244	4.39e-34	141
pORI00000355	84.828	145	14	1	97	233	245	389	1.58e-33	139
pORI00000355	84.828	145	14	1	97	233	1377	1233	1.58e-33	139