DoriC

RefSeq

NC_002002

DoriC accession number

pORI00000141

OriC length

1883 nt

OriC AT content

0.7743

The location of oriC region

5506..1107 nt

Browse in NCBI

OriC map

OriC sequences

AAGCTTCAGTAAGATAAAAAAGCAATAAACATTTAATTTATTGCTTTTTTATCTTATAGTTTAGTCATTGAGGGTAAATTTTTATAGTAATATATATTACAACAATATTACTATATTACTTTTTAACATTCTTTAGAAACATATCCATAATATAGTTCATTAGACTTGCGACAGTTATTCCATTTGTAGCAGCATACTTTTTGAAATTTGAGTAAATCTCTGAGTTTGTTTTCATTGATATAGTTATATCATTTTTTAAAGTTCTATAATGTTCAGGAAGTACAACAGTTTCATTATTTACATTAATTTTTCTTTCGTTAACAATATTAAAAAGTATTTCTAAATTTTCTTCATTAAACAAACTATTATATTTTTCTGGAACTGTCAATTGAAATTCTTGTTTTTCATTTATATTACTTTTTATATTACTATCTATATTACTTACACTTTCAGTAACTTCTTCTTCAGGCTTCACAAAATCTTTTAAAGTTTCATCAACATAAGTCATAACAGCTTTTTTATCCCTTTTGGAGCATAATTAACTTTTACATCATCTATGAATGTAACATCATAAGTTCCATTCTCTAGTTTTGTAATCTCATTAATTTTTTCTAAATATTTTTTAGCAAGACCCAAACCTTGTACCATAAAAAATCACTCCCCTTTTTATCTTAGTAATATATATTACTATAATATTACTAAATTTTAACATAGCATAAATTCACAAGTTCAATCGGTAATATTTATTACTACAATATTACTTTATTACTTCAACAGTATACACCTGTTTTTATAAAAAATAAAGAGTTTTTTTTATGCAGAAAAAATATTAAAATAAATTTTATAAAAAATCTCTAAAATCATTTTTAAGGCTTTTTATTTTATTGAGCCATACTTTTTATCATTAAAATATATAAAATCGTTTTTAGGACTATCCTAGGACTTTTAAATTGAATTTTAAATAATGTTTGTATGTTAAATTTCTTTTTGCTTTTTTAAATAAAAAAAGTTAGGCATTGTGAGAGTCCTAACTTTTTATGTCGTTTTGTTCAAGCAACGGATACTTTGTTGCTATGTTTCAAACTAATTATATCACATTCAATTTTTAATTTCAATATGTTATAATTCTAACTGTCGTTTCCTCCAAAGGAGGTGAAAGATGTTCAAGGAATGGATACTATTGATAATGGCTTTAATATTTATTGCTATTTTACAATATGCAGTTATATTAATATGGTTTTACATTATCACAAGTTTATTAGCATAGTTCTTGTAAAAAATAATGCTAGGGAGTTAGTAAAGTGTGAGAGCTTGAAAACTCTCTTTTATTTTTTAGGGAAAATATATTTATTTTCAATATTTTTTTACCGAAAGTTGAAAATCCACTTTCGGTAATTTTTTTAATTTTTTTATTGAGCTTCTTTTATTAAAAAAAATCACATTACTAATATGATTAATATAATAATATTATATAATAATATATAATACAGCACTCATTTTTCTTTTTAATAGCAATGTAAAACAAAAAGATAATAGGACAAATTTTCAAGATAACAGGACAAATTTTCAACTTAAAACAGGACAAATTTTCAACTTAATAGGACAAATTTTCAACTTTAACAGGACAAATTTTCAACTTAAAACAGGACAAATTTTTAACTTAATAGGACAAATTTCGTTGACAGTCTTATATTATTGGTGTATAATGTTTTTATGAAATAAAATTTCCATAAAAGGAGCTGAAGATTTTAGTGAATAATGATTTAGTAAAAGTACATAAAGATTTTACCAAATTAAATATAGGGACATTAAGTGAAAAAGAATTAGAATTATTTTATTATATATGTTTAAATGTAAAGGATATTAGAGATGAAATTATAACA

AT-rich region

The information of repeat sequences

Motif AAYAGGACAAATTTTCAACTT

Start	P-value		Site
1619	1.21e-12	TTTCAACTTT	AACAGGACAAATTTTCAACTT	AAAACAGGAC
1576	1.21e-12	TTCAACTTAA	AACAGGACAAATTTTCAACTT	AATAGGACAA
1553	1.21e-12	TTTTCAAGAT	AACAGGACAAATTTTCAACTT	AAAACAGGAC
1597	7.55e-12	TTTTCAACTT	AATAGGACAAATTTTCAACTT	TAACAGGACA
1532	1.93e-11	ACAAAAAGAT	AATAGGACAAATTTTCAAGAT	AACAGGACAA

Motif MAAGSARBKGA

Start	P-value		Site
1051	1.03e-07	TCGTTTTGTT	CAAGCAACGGA	TACTTTGTTG
1146	4.88e-07	CGTTTCCTCC	AAAGGAGGTGA	AAGATGTTCA
1733	5.68e-07	AATTTCCATA	AAAGGAGCTGA	AGATTTTAGT
1165	7.67e-07	GAAAGATGTT	CAAGGAATGGA	TACTATTGAT
1282	5.42e-06	TGTAAAAAAT	AATGCTAGGGA	GTTAGTAAAG

Motif AGTAATATATATTACWACAATATTACT

Start	P-value		Site
86	1.47e-13	AAATTTTTAT	AGTAATATATATTACAACAATATTACT	ATATTACTTT
736	1.28e-12	AAGTTCAATC	GGTAATATTTATTACTACAATATTACT	TTATTACTTC
674	5.84e-12	TTTTTATCTT	AGTAATATATATTACTATAATATTACT	AAATTTTAAC
1474	2.00e-10	AATATTATAT	AATAATATATAATACAGCACTCATTTT	TCTTTTTAAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000141	100.0	1883	0	0	1	1883	1	1883	0.0	3478
pORI00000141	95.062	81	3	1	1596	1676	1531	1610	1.38e-29	126
pORI00000141	95.062	81	3	1	1531	1610	1596	1676	1.38e-29	126
pORI00000768	96.098	1102	20	1	650	1751	1	1079	0.0	1775
pORI00000768	93.827	81	4	1	1596	1676	882	961	6.43e-28	121
pORI00000768	92.405	79	5	1	1532	1610	927	1004	3.87e-25	111
pORI00000143	96.832	505	11	5	1382	1883	4	506	0.0	839
pORI00000143	93.204	103	4	3	1576	1676	154	255	2.95e-36	148
pORI00000143	92.308	104	5	3	1531	1632	197	299	3.82e-35	145
pORI00000143	92.683	82	4	2	1596	1676	153	233	8.32e-27	117
pORI00000657	86.747	332	36	7	999	1327	343	669	0.0	363