DoriC

RefSeq

NC_002133

DoriC accession number

pORI00000180

OriC length

469 nt

OriC AT content

0.3817

The location of oriC region

3516..3984 nt

Browse in NCBI

OriC map

OriC sequences

GACACCCACGCCGGTGTCCACCGGTTGGCCGCAGCGTGCGCAGCGCGGCAGCTTAATCGGCTCGAATCCGAGCGTTTCGCCACCGGCATGACGGACGAGAATCTTTCGGCTTTCAGCGCGGCGACCATACGCCAGACGCCGTTAAATCGGTGCGGGAGAGGGAGGGGGTTATTTTATTCGTCTTTTCCCAAGGCGGGCCGCTACGCGCCCCGCTTGCCGCTTCCGCGGCTACGCCTTGAGGCTTCGCCGCTACTGCGGCGTGCAGCCGTTCGGCGGTCTGGTGCTGGGACGGTGAAGGGACACCCATCGGGTTCCACTTCGTCCCCTGAGTTGGTACACTCATAGTGACGACTTTCTAAAGTTGTAGCCAGCGGTGCAAAGTTTGGCGACCTAGACCGCTAGCGGACTTTCAAGATTCCCCCCGGGGTTCCAGCCCCGGGGGGTTTCCTTTTATCAGCTGTGACTCAGT

AT-rich region

The information of repeat sequences

Motif ACTTTCWARA

Start	P-value		Site
351	2.65e-07	CATAGTGACG	ACTTTCTAAA	GTTGTAGCCA
406	4.81e-07	CCGCTAGCGG	ACTTTCAAGA	TTCCCCCCGG

Motif ACACYCA

Start	P-value		Site
300	3.71e-05	CGGTGAAGGG	ACACCCA	TCGGGTTCCA
2	3.71e-05	G	ACACCCA	CGCCGGTGTC
336	6.39e-05	CTGAGTTGGT	ACACTCA	TAGTGACGAC

Motif TTTTAT

Start	P-value		Site
449	8.68e-05	GGGGGTTTCC	TTTTAT	CAGCTGTGAC
172	8.68e-05	GAGGGGGTTA	TTTTAT	TCGTCTTTTC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000180	100.0	469	0	0	1	469	1	469	0.0	867