DoriC

RefSeq

NC_002498

DoriC accession number

pORI00000268

OriC length

1763 nt

OriC AT content

0.4577

The location of oriC region

1473..3235 nt

Browse in NCBI

OriC map

OriC sequences

CTACTATTGTGATTATGCATGTTAATGCAATATTAAGCCATTGTACCATGTCGTTTTTTATTTTAAAGGATCCTGTAAATGATCTTAATCGGATCCTCTAATCAGACTAATTAACTTACTGATACGCACACGCCGGAGATACAGGCGGCCAGAGGTGGGCGAAATACACATGAATCACAGGCAGCTAAAGGGCGGAAGTCAAAACGCGGAGCTGTCGAGGACTCGGCGCGCAGCCTGCAACCGTGGGAGGCGTTAGGGATTAGTCGGCGTTGGTACTATCAGAAAAAGAAACGCGGCTTACTTTGAGAGTGCACCAAATAAAACCTATATCAGATAACAGCCCCCGTTAGGGGGTTTTTTGTTCTCGCCATTTTATCCCGTTGCATTCATCCCCACCGCTCGCCGCAAGACAGGATTAGGGAGCCATAGCGTAGCGCTGGCGATTCTGTCCTGTCGAGGAAGCGGAAGAGCACCTATGGTTGGGCTTTAGCGCGTTCGCACGGTGTTCCCGTGATCAGCTGATCAGTAACCAGTAGGCGGCGCAGGTTCCCGCAAACCCGAAAATCAGCAGGAACATGGCGCAGATCAGCAGCGTGGTAAACCGTTCCCAGCGCTCCCGCGTCCTGATGCCATCGATCGCAGTGCTCAGATCCGCTGTCTGCCGTTGTACGGCGGCGATGACCTTCAGCATCTCTTTGCCCCTGTTCTGTGTCTTCTCCAGCAGCTCCCGGTGTTCGCCGGCCAGTTTGGCTGTCTGCCTGTCGATGTTCCGTGCTGAGGACTCCAGCCGGGTGAGCTCGTTCTGCGCCTGCTCAAATCGCCGCCCGGTCATATTTTCGCACAGTGTGCGTTTCACAAAGTCGCTCAGCGATAGCCGGTTTTTCTCGGCGAGGGCTTCCAGTTCGTGACGCATTTCACTGCTGATCCGGATGCTCAGGGTGGTGGTTTTCGTGGTCATGGCAAAACGTCCTGTAAACGGGGTGTTTGCAGACCGTACACAGCAGGCGTGGCGGGGTTCAACGCCTGATTTTGGTAGGTGTTTCTGTAGACACATTTCTCAACGACAGGCACGAGACCGATTGTACACACGGGGAAAATCCCCGTTACACAATCGGCGTGCCAAAGGGTGCCCCTTTGCAACCCAACCCCATGCGGTTCTACGAACCTCAAAACCACTCAACCCAGGGACAAGGTATGTTTTGTTGAACCGCCAAGGTTTGGCGGCACACAAAACCCCCGGACAGGGCGATGCGCCCCGACACCCGGCAGATTTTTTTGCATGCAAAAATTTTGGCGTTACTGACGCGCTGGCGCTTGTCCAACGATGATCGGCGCCCGGAAAAATTCCGGCCACCGATCACCGTTACCGGGTAACGCTGAGGGGAAAAAATCGGGGGTTGGTGGCCGATTGGCGCTGAATCTGACCGTCATGCAGTGTCGTGAATGGCTATGCAACGCCGCCAGAATCATCCTGCGCGATTTTGGCCGTCTTGGGGGTACGAAGCTGCGTCTTTTGCCGATAACGCCTCAGAATCGCGCTCAGCACGTCTGAGGCGGTGCGCCGAGCGGGCGTTATGGTAAATACTTGAGGGATCGACAGGTCTTGTTGTTGGGTGTACTTTGGAACGCAGAAAAACAAACGCCCCCGAAATCGTGTGCAATCTTGGCGGATGTCACGATAACGAGGGCGCAGGCGTAAACCTTGAGAGGATATTAGCACATGGATATGTCCACACAACAGCCCGCCATAAGTGCAGGCAGGT

AT-rich region

The information of repeat sequences

Motif CAVACAAMAGCCCCCGAHA

Start	P-value		Site
1732	4.15e-10	TGGATATGTC	CACACAACAGCCCGCCATA	AGTGCAGGCA
1225	1.05e-09	GGTTTGGCGG	CACACAAAACCCCCGGACA	GGGCGATGCG
331	1.05e-09	AAACCTATAT	CAGATAACAGCCCCCGTTA	GGGGGTTTTT
1633	1.73e-09	GGAACGCAGA	AAAACAAACGCCCCCGAAA	TCGTGTGCAA

Motif GGYAGGTBTTKTTGHABVSHVAANTTT

Start	P-value		Site
1265	1.21e-12	CCCGACACCC	GGCAGATTTTTTTGCATGCAAAAATTT	TGGCGTTACT
1032	2.56e-11	GCCTGATTTT	GGTAGGTGTTTCTGTAGACACATTTCT	CAACGACAGG
1192	4.09e-11	CCAGGGACAA	GGTATGTTTTGTTGAACCGCCAAGGTT	TGGCGGCACA
1596	6.19e-11	TTGAGGGATC	GACAGGTCTTGTTGTTGGGTGTACTTT	GGAACGCAGA

Motif ATCCTSTAAAC

Start	P-value		Site
70	6.03e-07	ATTTTAAAGG	ATCCTGTAAAT	GATCTTAATC
93	1.06e-06	TCTTAATCGG	ATCCTCTAATC	AGACTAATTA
967	1.95e-06	ATGGCAAAAC	GTCCTGTAAAC	GGGGTGTTTG
1163	3.41e-06	CGGTTCTACG	AACCTCAAAAC	CACTCAACCC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000268	100.0	1763	0	0	1	1763	1	1763	0.0	3256
pORI00000269	85.036	548	72	10	121	662	880	1423	0.0	549
pORI00000269	95.918	49	1	1	307	354	1	49	3.67e-15	79