DoriC

RefSeq

NC_002498

DoriC accession number

pORI00000269

OriC length

2488 nt

OriC AT content

0.5318

The location of oriC region

4178..1022 nt

Browse in NCBI

OriC map

OriC sequences

GAGTGCACCAGATAACAACCTATATCAGATAACAGCCCCCGTTAGGGGGGGGTTGTTCTGTAGGTCTGCGCACCGATGATACATACTGGGTATTGTTAACACCGTTTAGCATCGGTATGATCGCCAGTGATTATTGGGGCAGCTATGCAAGGGAAGTCCTGCTGGATTAACATTTAACAGGTGACGTATTCACCCAACGTATCTAGTGTCACAACTTGACGCTGTGTACCTGCATTAAGCGGTTGGTTCGGTTATTGACAACATATGTCCTACTAAATTGATGCACTATTCCTATACATATCCATTTGCCCGTATAATATACTCATGTAGTTTTGTAACTTCATCATCTGGTTTTATTTCTTTTCCTGTTTCCACCATATCTCTTTCTCTCAGCTCATGGTCTGTCATTTTGGCTAATTCGCAGGAAATGGCTTGATGGAGAGCTTTAGGCGACACAGCTAATGAGAGTGACTCTGTATCTTTTAATTCCTCAGGGCTTGCTAGAATAAAAACCTCTTCTGAATCAGTGTTGTATTCACATGAGATACGCTCGGAAAGGTCATTTTTATATGTCTCTACATCAGACTCCGCTGCGTCATTAGGAATATGAAGGTCGTGGAAAACATTACATTTAATCATATTATTACTAATCATATAACACCTACTAAGTATAGCTACCTTAAACTCATTCCCTATTTTTTATTAAAAACGAATCAACTTCGCTTGACTGGATTTCCCCATCCTAAAAAGGCTATCAGTCACAAGCCAATATACACAAAAGGGGGGTTGTTTACCATAACACTAGTTATATGCTGCGTATGAAAAAGCTCGCAGTACGGGATTTAATCGTAAACTTCGCGCCTGTGCTTTATTGTGGCAGATACGCACACGCCAGAGATACAGGCGGCCAGAGGTGGGCGAAATACACATGAATCACAGGCAGCTAAAGGGCGGAAGTCAAAACGCGGAGCTGTTGAGGACTCGGCGCGCAGCCTGAAACCGTGGGAGGCATTGGGGATCAGTCGCCGGACGTACTACCGACACAAGAAGCGCCAATCTGAGATTGAGTGACACCAGATAACAACCTATATCAGATAACAGCCCCCGTTAGGGGGCTTTTTGTTCTCGTCATTTTATCCCTTTGCGTTTATCCCCACCGCTTGCCGTAAGACAGGATTCGGGAGCTATCGCGCAGCGCTGGCGATTCTGTCCGGACGAGGAAGCTGAATAGTCCACAATGGTTGTGGCTTTAGCGCATTCTCACGGTGTTCCGTGTTTAGAGGATCTGTTTCCAGTCGGTGGCACAGATGCCCGCATATCCTAAAATCAGCATGTACATGGTGCAGATTAGCCGAGTGGTGAACCGTCCCAGCGCTCCTGCCTCCTGATGCTATCGATCACTGTACTCAGCTCCCCTGTTTGCTGAAAGCAGCTCCATTGCCGAGGTTCGGGTTTATTAAATTCTGAATTCTGAGGTGCTCCCTTCTTAGGCTGGGATGAAGACTCGCCGTACAGTGGAGGCGCGAGCGTCGCTCTCCTCACTCTCTGGCAAACGACGTAGATTGTGCTCACCGAAACTTGAGAAGGTCATGCCAATACCGTGATAACCGCTTACTCGAGGTTGCTCGAAACCCTCCCGCGTCATCTCGTTGCTTAATGTCTGGGCAAATGGTTCGGCCACGATCTCCTTCTTGCCAAATAGGCCAAGAAATCCACTGCGTTGAGTTTCTGGTTGAGATGCTAGATCAAGAGCCGATTTTTGAAATGAAGTTGGCTCGCAGGTATCTGCGCTCCAGCAGGCGGTCACACGGATATCGGTAAAGCGCTTGTCAAGCCCACCTTCAGCCAGCTGATGGGCAATTTCCTTGGCGGTGACCATTCCTTGCTGGCAGGCTGGATCTTCCGCCAGAATATCCATGCCTGCTCCGCCGTGTCCAACTACATAGAGTTTATGTTGGTCTGGGGAGAGTGATTTCAGGTCATTGCTGCTCTTTATCGTTAAATTTGTTAGAGCATCAATTAGAGCGCAGTACTTTACGATTCTTTTTTGTATGTTATCAAAGCCTTCTGGGCCTAATGGATAATGCTGACGAGCTTCTTTTTCGGTTAAACCATGTTGGGTTATTTGGTCTATATATTCTTTGAGATGTAATATTTCTGCTTCGTATTCTTCTTTCCACTTGCTAAGCAGGGTTGCTCTCATTTGCTCCAGTGTGGCCTTGTCCTGTTCGTTGCGGCTGAGCAATGGGTAGATAGGCTTGCTTTGTTTAGTGCGAACCATGTTCTTGCCTATCGCCATATCTACTATGTCTGATGATGCAAAGGGCGCATACAGTACGCCTTGTTTTTTATGAGTATAGGGGCCCTCATGAAAGCTGATATTGGCAGATGTGGCTAGGCCGATACGAGTTGTTGCTCCAGTGTCTACGCTATGAGTGGCGGTGGAGTGCGAGGCCGTTGCGATGATGCGGTTGATAGGTAACATGGC

AT-rich region

The information of repeat sequences

Motif AYCAGATAACAVCC

Start	P-value		Site
1090	4.77e-09	AACAACCTAT	ATCAGATAACAGCC	CCCGTTAGGG
24	4.77e-09	AACAACCTAT	ATCAGATAACAGCC	CCCGTTAGGG
1073	6.60e-09	ATTGAGTGAC	ACCAGATAACAACC	TATATCAGAT
7	6.60e-09	GAGTGC	ACCAGATAACAACC	TATATCAGAT
650	6.11e-08	ATTATTACTA	ATCATATAACACCT	ACTAAGTATA

Motif GCCAVVATATCC

Start	P-value		Site
1905	2.11e-07	TGGATCTTCC	GCCAGAATATCC	ATGCCTGCTC
1703	6.26e-07	TGCCAAATAG	GCCAAGAAATCC	ACTGCGTTGA
1677	9.49e-07	AAATGGTTCG	GCCACGATCTCC	TTCTTGCCAA
1310	9.49e-07	TGGCACAGAT	GCCCGCATATCC	TAAAATCAGC

Motif CGCYRGMSRTWCWRBCSRSMMRAGRWRSSYSAA

Start	P-value		Site
890	1.40e-16	GATACGCACA	CGCCAGAGATACAGGCGGCCAGAGGTGGGCGAA	ATACACATGA
1024	2.30e-15	GGGGATCAGT	CGCCGGACGTACTACCGACACAAGAAGCGCCAA	TCTGAGATTG
1196	5.60e-15	TATCGCGCAG	CGCTGGCGATTCTGTCCGGACGAGGAAGCTGAA	TAGTCCACAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000269	100.0	2488	0	0	1	2488	1	2488	0.0	4595
pORI00000269	98.0	50	0	1	1066	1115	1	49	3.11e-17	86
pORI00000269	98.0	50	0	1	1	49	1066	1115	3.11e-17	86
pORI00000268	85.064	549	70	11	880	1423	121	662	0.0	549
pORI00000268	95.918	49	1	1	1	49	307	354	5.2e-15	79