DoriC

RefSeq

NC_002636

DoriC accession number

pORI00000144

OriC length

472 nt

OriC AT content

0.3771

The location of oriC region

1..472 nt

Browse in NCBI

OriC map

OriC sequences

CCCCCTGTTTAACAGTCACGCCCTCCCCCGGCGTAACTGTCACGCCCCCCCGGCGTAACTGTCACGAACCCCCGGCGTAACTGTCACGCCCCTAAACCTGCAAACCCAGGAAGGGGGGGGGCTGGTGGGGTGTTGGAAAAATCCATCCATGATTATCCAAGAATAATCCACTAGGCGCGGTTAACAGCGCCCTAGTGGGGCGCTGTTTGCCCTTGCTTAAAATGCCGGCCAGAGGCCGGATAACTTCTCTATCCGCTGCGCTAGGCTACACACCGCCCCCACCCGCTGCGCGGCAGGGGGAAAGGCGGGCAAAGCCCGCTAAACCCCACACCAAATCCCGCGGGAATACGCTGGAGCGATTTTAGCCGCTTTAGCGGCCTTTTCCCTACCCGAAGGGTGGGGGCGGTGTGCAGCCCCGCGAAGGGGCCATTCAGGGGCCATTCAGGGGCCATTCTGACCGCCTTGCGCTTGG

AT-rich region

The information of repeat sequences

Motif CCCCCGGCGTAACTGTCACG

Start	P-value		Site
69	4.70e-12	CTGTCACGAA	CCCCCGGCGTAACTGTCACG	CCCCTAAACC
47	4.70e-12	CTGTCACGCC	CCCCCGGCGTAACTGTCACG	AACCCCCGGC
25	4.70e-12	GTCACGCCCT	CCCCCGGCGTAACTGTCACG	CCCCCCCGGC
1	4.02e-11	.	CCCCCTGTTTAACAGTCACG	CCCTCCCCCG

Motif AGGGGCCATTY

Start	P-value		Site
444	5.05e-07	GGGGCCATTC	AGGGGCCATTC	TGACCGCCTT
433	5.05e-07	GGGGCCATTC	AGGGGCCATTC	AGGGGCCATT
422	5.05e-07	AGCCCCGCGA	AGGGGCCATTC	AGGGGCCATT
373	5.84e-06	TAGCCGCTTT	AGCGGCCTTTT	CCCTACCCGA
352	7.04e-06	GGGAATACGC	TGGAGCGATTT	TAGCCGCTTT

Motif GKGGGGBGBTG

Start	P-value		Site
195	5.87e-07	CAGCGCCCTA	GTGGGGCGCTG	TTTGCCCTTG
125	1.39e-06	GGGGGGGCTG	GTGGGGTGTTG	GAAAAATCCA
114	7.66e-06	ACCCAGGAAG	GGGGGGGGCTG	GTGGGGTGTT
398	1.30e-05	ACCCGAAGGG	TGGGGGCGGTG	TGCAGCCCCG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000144	100.0	472	0	0	1	472	1	472	872
pORI00000362	96.257	374	9	4	11	383	36	405	608
pORI00000140	92.722	371	19	7	82	449	191	556	529
pORI00000458	88.889	288	30	2	34	320	9	295	353