DoriC

RefSeq

NC_002675

DoriC accession number

pORI00000363

OriC length

1148 nt

OriC AT content

0.6359

The location of oriC region

2390..212 nt

Browse in NCBI

OriC map

OriC sequences

CAGGAGAGAAAACTCCTGCTTTTTTATTTTAAGGATTTTTGGTGGTGAAATCATCAAAAAATGCTATAATAAAGTCATAGAGTATTTATGTTTACGCCATCGAGATTGATGGAAGTTGCGAATCTCCTTTCACGAGGAGAAGGGCAACAAAAAGTGTTTGTTCGTTGCGAATCTCCTTTCACGAGGAGCAGGGCAACAAAACAAAAAGTGTTTGTTCACTCCATGAAGTGGAGTTGCTGTGAAAAATCTTCTGAGTGTTTGAAATGAAATGTTTGTTACTTTGGGCTGGGGAGTCCGTCCAGCCAAGGCAATCGGCCGGTAACAATCTTATAAAAGGATAGTTGAAAATAAAACGAGCGTTTTAGTGACGGTCGTTTTTTGTTTTTTAAAATAAAAAAAGGAGATGATTTTCATGAGTAAAAAAATAGAAGTGGCGCAACATTTGTCAGATGCTGAATACAAAATTTTATTGGGAAACATATGCGAAATCATAACAGAAGCATGGGATTGGAAGAACGTAAGAAATATACGTTATCGCATATTGTGAAAGTCGAAAGAAACGTTGAAGAGAATTGTTTGAATGTGTATTACGAAAATGGTGAGTGGTGGCATTATACACCAGATGGTACATGGTACTAAGAAAGGATAGTTGAAAATAAAAACGATCGTTTTAGTGACGGTCGTTTTTTTATTGTTTTTTTAAAAAAACAAATAGAAAGGAGGAATCCAAAAGAAAAAAGGTTTTATATCCCTGTTCTAAGGGATGAAAAAAGGGATGAAAAAAGGGAAAGGGAGAACAAAGCGGTTATTGTTTTGTACAGAAAAATTTCGATGAGTAGGGATAGGATTTAAAACAATTCGCAAGAAATGCGTTGCGAATTGAGGGAGAAATTTATCGCCCTCCCGGATTTTGTCTGGGGAAAGGATAACGCTGCTGAATTCGGTGTGGAACAGAATTTCATATTTTTTTACGGAAAACGAACATGAGCCTCATGCGAACAATGTGAGCATGAGGCTCAGGGATAAGCCTTTTATATCAAGCCTTTGACCGATGATTTCACAAAAAAATCGGAAGTCAAAGGTGTATTTCACTATGCCCTTTTTTTTTGTAAGGAGTGGTGTTTTTGAGCATAATTAATCAGGTGAAT

AT-rich region

The information of repeat sequences

Motif STKGSGARTCTSYTTWSACRAGGARAWSGGCARS

Start	P-value		Site
164	1.67e-20	GTGTTTGTTC	GTTGCGAATCTCCTTTCACGAGGAGCAGGGCAAC	AAAACAAAAA
115	3.96e-20	ATTGATGGAA	GTTGCGAATCTCCTTTCACGAGGAGAAGGGCAAC	AAAAAGTGTT
286	1.28e-15	TTACTTTGGG	CTGGGGAGTCCGTCCAGCCAAGGCAATCGGCCGG	TAACAATCTT

Motif CGAKCGTTTTAGTGACGGTCGTTTTTT

Start	P-value		Site
354	4.06e-17	GAAAATAAAA	CGAGCGTTTTAGTGACGGTCGTTTTTT	GTTTTTTAAA
663	9.01e-17	AAAATAAAAA	CGATCGTTTTAGTGACGGTCGTTTTTT	TATTGTTTTT

Motif CGCCMTC

Start	P-value		Site
897	2.29e-06	AGAAATTTAT	CGCCCTC	CCGGATTTTG
95	8.50e-06	TTTATGTTTA	CGCCATC	GAGATTGATG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000363	100.0	1148	0	0	1	1148	1	1148	0.0	2121