DoriC

RefSeq

NC_003131

DoriC accession number

pORI00000341

OriC length

2162 nt

OriC AT content

0.5106

The location of oriC region

54129..56290 nt

Browse in NCBI

OriC map

OriC sequences

ACAAAAGCTCTTTAATCTGATTTACGGTGATATCTATCATTGATTAAACCCGTCCCAGAATATATCACTTCCAGCCACTGATTTTTAGTTATTGTAGATATTTGGGGATCCCCCGAACCTGTAGACAAATCTGACCTATATCTTAAGCATAGGAGGAGTCTATGGGCACACCACGTTTTACCCCTGAATTTAAGGAAGAAGCTGTCCGTCAGATAACTGAGCGGAGCTATTCCGTTGCTGTAGTGGATCACAAAATCAGGACACCTTCGTAGCCTTTTTCCCCTGCTCTTCGTATTCACAGGGCGGTAATCCACCATTGTGCCGATGGGGGTGTGTTGTAATAACTTTGTATCCATTCACCGATATCTCGTACCGCATGATGGACATCCATATAGCCCCCTACAGGCAGCCATTCACTTTTCAGGCTTCGGAACACTCTTTCCATTGGTGAGTTATCCAGGCAGTTACCCCTGCGGCTCATACTCTGCATCACTCCGGTCCTCCACAGTAACTGCCTGGATTTCTTACTCCTGTACTGCCCTCCCTGATCCGAATGAAACAGCAGCCTCTTCACAACCAGACCCCGTGTTTGTTCCAACGCAGAACTTTGATACGCGAACGCGCCTTTGTTGCAAAAGACAAAGGCGGCTTCGCCTTGCCAGGGCTGATGCAGATGGTCGGTAATGTATTGCGATACCGCGACGCATATCGACCGGCTCGCGTGCCAACCAGATGTGTTGTGGCGTCAACATAGGGATAAGGCCTGCATAACAGCGCGTAACTGAGCAGGAAGACAACTGACCGAACAGCCATTGGGGAGGTTGAGGGTCACTGCCTCGGTACCGTTATTGTCTGGTATTACCCGGCGAGCGGGGATAAACGCAGGGGGAATGGCAACGGTGGTGTCATCTTGATGATGTTTGAGCCAGTAATAAAAGGTGGCGATGTTCAAGTCATGCAGCCGACAGTAGTGTTTTTTAGACATTCAGCTCTATTGCCAGGCGTCGAGATGGTGCTGCCGTTCACTACGAGAATACCGTGTCGTCATATTTCACCTCAGGTTCGTTGTATTGACTGAGACCAGAGTGTGATAACGGAAGTGAGTTAACAATATGAGATCGCCGCTCGCTTACGGCTGTTCCGTATACACTGTCAATGTAGTCACTCAGCTGCATAACGATATCCACAAAAGTGCTTATAAACACAAACGTTTATATCATGTCCTTACCGGACAGGCGAGCAGTGCGCAGCCGGTCTTTTCAATGCCGCATCGCGGCATGAAGGCGCCAGCGGATATTAACTATAACTCTGTTGACAATTGGCGCCGATAGCCCGGCGTAGCCGGTTCCGGTTTGATAGGTTTCACCAATCCCAATCTCCTCCCTGCAAAGCTAAACCCACTAAAAGTAGCGTAGGTGCTTCATTACGCGGTCGGAGTGGTCCCGACAAGGCTTTGCCGCAGGCGGGGCGTATCTCCGCGTTAGCGGGCCATTAGGGCCGCTTACGAGCGTGTTCGAATGACTTCCAGCGACATGACTTGCAGCGACTCGAAAATTTTAGTTACAACACTCATTGTAAAGCCACTCTGTTCCGGGCCGTTGGCCCGGGGCGGGGCGGGGCGGCTTTTTAGTGGGTAAGGGTGCGCGCAGTGGTCTCAGATGTATGCGGTCTGGTATTTTTTTGGTCGAATCGTGAATGTTGTAACTAATAGGGGTTTATGCGCTCGTAGCATCGTGATAGGAGGTATTTCTTTGTTTCCGAACCGGCGCGAACGTAAGTTCGCTGCAAGGGCGGGCATTATCATAGTCTGTCCAAAAGGCAGACGACGAATAGGTTATTTATTTATAGGAATAAAAGAAAAGGTATTTAAAAGAAGTGCTGATCAGTGGTTTAAAAGAAACCACGCACTTTAAAACAAGTTCGGCTGGCGCTTAAAAAACATATCGGTTGTAACTTTATGGGAAGTTCCCTTGCAGTTAACTGTGGATAACCTAAATCAGTACATTCAAGCGACGATATTGGGAGAATTCGAGGGCATTTTCAGGGCGGGAAAGAGAAGATAGGTCATGTAGCGGCCGTCACATCGCTCAAATAACAAGCACTGACAGGAGGCAGACGAGCGAAATCCTCCGGCGCTAACCGGATTTTCAGTAAATACGACG

AT-rich region

The information of repeat sequences

Motif ATSACTTSCAGCSAC

Start	P-value		Site
1518	8.23e-10	GCGTGTTCGA	ATGACTTCCAGCGAC	ATGACTTGCA
1533	3.23e-09	TTCCAGCGAC	ATGACTTGCAGCGAC	TCGAAAATTT
64	3.94e-09	CCCAGAATAT	ATCACTTCCAGCCAC	TGATTTTTAG

Motif ATYCRGGCCGWTDGCCCGGCG

Start	P-value		Site
1318	1.14e-10	TCTGTTGACA	ATTGGCGCCGATAGCCCGGCG	TAGCCGGTTC
1589	2.61e-10	AGCCACTCTG	TTCCGGGCCGTTGGCCCGGGG	CGGGGCGGGG
455	3.74e-10	TTGGTGAGTT	ATCCAGGCAGTTACCCCTGCG	GCTCATACTC
984	2.36e-09	TTTTTTAGAC	ATTCAGCTCTATTGCCAGGCG	TCGAGATGGT

Motif ACANCACTCACTKHAMARCCA

Start	P-value		Site
1563	4.36e-10	AATTTTAGTT	ACAACACTCATTGTAAAGCCA	CTCTGTTCCG
1898	1.73e-09	GGTTTAAAAG	AAACCACGCACTTTAAAACAA	GTTCGGCTGG
559	6.51e-09	TCCGAATGAA	ACAGCAGCCTCTTCACAACCA	GACCCCGTGT
792	1.07e-08	CTGAGCAGGA	AGACAACTGACCGAACAGCCA	TTGGGGAGGT
2081	1.17e-08	AGCGGCCGTC	ACATCGCTCAAATAACAAGCA	CTGACAGGAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000341	100.0	2162	0	0	1	2162	1	2162	3993
pORI00000214	99.278	831	1	1	1332	2162	826	1	1496
pORI00000041	94.404	965	42	5	1199	2162	954	1	1472