DoriC

RefSeq

NC_003132

DoriC accession number

pORI00000343

OriC length

1235 nt

OriC AT content

0.485

The location of oriC region

3120..4354 nt

Browse in NCBI

OriC map

OriC sequences

CGAAGCTCCCGGAGACGGTCACAGCTTGTCTGTGAACGGATGCCGGGAGCAGACAAGCCCGTCAGGGCGCGTCAGCGGGTTTTAGCGGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTAGTCATGCGGCATCAGTGCGGATTGTATGAAAAGTGCACCATGTACGGTGTGAAATGCCGCACAGATGCGTAAGGAGAACATGCAGATGCCGATGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTGTCTGCTCACTCAAAAGCGGTGATACTGTTATCCACACAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAAACGAAGACCCCAGAAAAGGCCGCGCCGGAGGCGCTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTTAAAGATACCAGGCGTTTCCCCCCGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTCTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTTGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCACTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTTACGCCACTGGCAGCAGCCATTGGTAACTGAAAAGTGGATTTAGATACGCAGAACTCTTGAAGTTGAAGCCTTATCGCGGCTACACTGAAAGGACAGCATTTGGTATCTGTGCTCCACTTAAGCCAGCTACCACAGGTTAGAAAGCCTGAGAAACTTCTAACCTTCGAAAGAACCCACGCCTGAGAACGTGGGTTTTTTCGTTTACAGGCAGCAGATTACGCGCAGAAAAAAAGGATCTCAAGAAGATCCTTTGATCTTTTCTACTGAATTGCGCTCCCGATCAGTTCAGCAGAAGATTATGATGGGGTTCTATGGGTATTGCTGCGGTAACACCCATGTTACTTGAGGTTGTATGTAGTCTGTGTAGAATTATACACATAAGGCTTAAACTGCTCTTTTTTTTCAATATGCAATTGGAAGTTCATTGACTACATAAATAGATTATTCCAAATAATTTATTTATGTAAGAACAGGATGGGAGGGGGA

AT-rich region

The information of repeat sequences

Motif GCHDTTGGTADCTSA

Start	P-value		Site
616	2.51e-08	CATAGCTCAC	GCTGTTGGTATCTCA	GTTCGGTGTA
765	3.40e-08	ACTGGCAGCA	GCCATTGGTAACTGA	AAAGTGGATT
845	5.22e-08	TGAAAGGACA	GCATTTGGTATCTGT	GCTCCACTTA
1159	1.76e-07	TTTTCAATAT	GCAATTGGAAGTTCA	TTGACTACAT

Motif AYAMVCAKAWBNYTTGAAVTTNTHTNYTK

Start	P-value		Site
793	3.89e-11	GTGGATTTAG	ATACGCAGAACTCTTGAAGTTGAAGCCTT	ATCGCGGCTA
1121	8.03e-11	GTGTAGAATT	ATACACATAAGGCTTAAACTGCTCTTTTT	TTTCAATATG
1079	2.34e-10	TGCTGCGGTA	ACACCCATGTTACTTGAGGTTGTATGTAG	TCTGTGTAGA
987	3.22e-10	AAAAAGGATC	TCAAGAAGATCCTTTGATCTTTTCTACTG	AATTGCGCTC
1182	3.47e-10	CATTGACTAC	ATAAATAGATTATTCCAAATAATTTATTT	ATGTAAGAAC

Motif CTGCVGCTTMCYCGNTMVCTVTCBBSYT

Start	P-value		Site
549	1.13e-12	TGTTCCGACC	CTGCCGCTTACCGGATACCTCTCCGCCT	TTCTCCCTTC
695	1.09e-11	AGCCCGACCA	CTGCGCCTTATCCGGTAACTATCGTCTT	GAGTCCAACC
243	1.22e-11	TGCCGATGCT	CTTCCGCTTCCTCGCTCACTGACTCGCT	GCGCTCGGTC
515	4.89e-11	CGTTTCCCCC	CGGAAGCTCCCTCGTGCGCTCTCCTGTT	CCGACCCTGC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000343	100.0	1235	0	0	1	1235	1	1235	0.0	2281
pORI00000058	91.576	1009	68	14	4	1009	995	1	0.0	1376
pORI00000320	89.139	1022	94	16	1	1014	1112	100	0.0	1256
pORI00000312	89.139	1022	94	16	1	1014	1112	100	0.0	1256
pORI00000309	89.351	986	87	16	4	981	1039	64	0.0	1223
pORI00000306	87.535	1059	105	22	4	1042	138	1189	0.0	1199
pORI00000012	88.322	1019	90	25	6	1013	1055	55	0.0	1195
pORI00000112	89.278	942	84	16	65	997	1907	974	0.0	1173
pORI00000022	87.671	1022	94	25	1	1001	1018	8	0.0	1160
pORI00000315	92.407	777	51	8	4	776	1743	971	0.0	1101
pORI00000308	88.249	868	83	17	122	981	920	64	0.0	1020
pORI00000239	86.454	908	86	25	135	1013	78	977	0.0	961
pORI00000294	87.266	801	70	22	240	1013	368	1163	0.0	885
pORI00000292	87.266	801	70	22	240	1013	368	1163	0.0	885
pORI00000290	87.266	801	70	22	240	1013	359	1154	0.0	885
pORI00000301	87.141	801	71	20	240	1013	943	148	0.0	880
pORI00000224	87.016	801	72	20	240	1013	943	148	0.0	874
pORI00000223	87.016	801	72	20	240	1013	943	148	0.0	874
pORI00000223	95.789	95	4	0	4	98	1582	1488	4.14e-38	154
pORI00000222	87.016	801	72	20	240	1013	943	148	0.0	874
pORI00000097	87.016	801	72	20	240	1013	943	148	0.0	874
pORI00000097	95.789	95	4	0	4	98	2102	2008	4.14e-38	154
pORI00000111	82.617	1024	122	49	1	1009	1022	40	0.0	854
pORI00000092	86.65	794	73	21	247	1013	935	148	0.0	848
pORI00000092	95.789	95	4	0	4	98	1966	1872	4.14e-38	154
pORI00000092	100.0	49	0	0	240	288	1055	1007	3.29e-19	92
pORI00000008	81.216	559	73	20	473	1009	1103	1651	0.0	422
pORI00000240	87.535	353	30	12	4	356	1388	1050	0.0	396
pORI00000240	77.878	556	92	25	466	1009	947	411	0.0	316
pORI00000240	85.714	70	6	3	382	451	1067	1002	4.29e-13	71
pORI00000094	76.835	790	117	49	78	854	940	1676	0.0	385
pORI00000093	76.835	790	117	49	78	854	24	760	0.0	385
pORI00000110	77.949	585	82	37	393	969	2745	2200	0.0	322
pORI00000110	81.743	241	33	11	67	301	3046	2811	0.0	191
pORI00000244	77.647	595	82	38	412	997	795	243	0.0	315
pORI00000043	82.097	391	47	16	392	779	715	345	0.0	313
pORI00000061	77.496	591	85	36	412	994	718	168	0.0	311
pORI00000238	97.203	143	4	0	4	146	1200	1058	0.0	243
pORI00000060	97.203	143	4	0	4	146	1387	1529	0.0	243
pORI00000307	78.947	266	40	16	52	310	1185	929	5.31933e-42	167
pORI00000116	78.947	266	40	16	52	310	1185	929	5.31933e-42	167
pORI00000098	79.668	241	35	14	78	310	1163	929	2.48e-40	161
pORI00000095	79.668	241	35	14	78	310	1163	929	2.48e-40	161
pORI00000284	86.111	144	9	4	412	544	206	349	2.49e-35	145
pORI00000234	86.111	144	9	4	412	544	206	349	2.49e-35	145
pORI00000210	86.111	144	9	4	412	544	206	349	2.49e-35	145
pORI00000209	86.111	144	9	4	412	544	206	349	2.49e-35	145
pORI00001057	92.308	78	6	0	239	316	699	776	2.53e-25	111
pORI00000947	92.308	78	6	0	239	316	721	798	2.53e-25	111
pORI00000921	92.308	78	6	0	239	316	340	263	2.53e-25	111
pORI00000702	92.308	78	6	0	239	316	699	776	2.53e-25	111
pORI00000446	92.308	78	6	0	239	316	340	263	2.53e-25	111
pORI00000072	92.308	78	6	0	239	316	527	604	2.53e-25	111
pORI00000031	92.308	78	6	0	239	316	535	458	2.53e-25	111
pORI00001164	93.151	73	5	0	244	316	818	890	3.27e-24	108
pORI00001144	93.151	73	5	0	244	316	307	235	3.27e-24	108
pORI00001062	90.244	82	8	0	235	316	583	664	3.27e-24	108
pORI00001056	93.151	73	5	0	244	316	818	890	3.27e-24	108
pORI00001020	93.151	73	5	0	244	316	307	235	3.27e-24	108
pORI00001011	93.151	73	5	0	244	316	818	890	3.27e-24	108
pORI00000834	93.151	73	5	0	244	316	818	890	3.27e-24	108
pORI00000181	96.667	60	2	0	87	146	725	784	5.47e-22	100
pORI00000124	92.308	65	3	1	87	149	844	780	3.29e-19	92
pORI00000011	92.063	63	4	1	87	149	842	781	4.26e-18	88